WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$E2F1_Q4_01       ID:DB_ID:2312
C=226; O=3; E=0.21; R=13.96; rawP=0.0013; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
2  ENSG00000082258 NA CCNT2 cyclin T2 905 ENSG00000082258
3  ENSG00000186908 NA ZDHHC17 zinc finger, DHHC-type containing 17 23390 ENSG00000186908


Database:Transcription Target       Name:hsa_V$STAT1_03       ID:DB_ID:2147
C=244; O=3; E=0.23; R=12.93; rawP=0.0016; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
2  ENSG00000074211 NA PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 5522 ENSG00000074211
3  ENSG00000113649 NA TCERG1 transcription elongation regulator 1 10915 ENSG00000113649


Database:Transcription Target       Name:hsa_V$IRF_Q6       ID:DB_ID:2256
C=240; O=3; E=0.23; R=13.15; rawP=0.0016; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
2  ENSG00000082258 NA CCNT2 cyclin T2 905 ENSG00000082258
3  ENSG00000110047 NA EHD1 EH-domain containing 1 10938 ENSG00000110047


Database:Transcription Target       Name:hsa_V$FOXO3_01       ID:DB_ID:2131
C=243; O=3; E=0.23; R=12.99; rawP=0.0016; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000166340 NA TPP1 tripeptidyl peptidase I 1200 ENSG00000166340
2  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
3  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298


Database:Transcription Target       Name:hsa_TCCATTKW_UNKNOWN       ID:DB_ID:2363
C=237; O=3; E=0.23; R=13.31; rawP=0.0015; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000082258 NA CCNT2 cyclin T2 905 ENSG00000082258
2  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298
3  ENSG00000161958 NA FGF11 fibroblast growth factor 11 2256 ENSG00000161958


Database:Transcription Target       Name:hsa_RGAANNTTC_V$HSF1_01       ID:DB_ID:2425
C=441; O=4; E=0.42; R=9.54; rawP=0.0008; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298
2  ENSG00000074211 NA PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 5522 ENSG00000074211
3  ENSG00000135164 NA DMTF1 cyclin D binding myb-like transcription factor 1 9988 ENSG00000135164
4  ENSG00000110047 NA EHD1 EH-domain containing 1 10938 ENSG00000110047


Database:Transcription Target       Name:hsa_V$FOXO4_02       ID:DB_ID:2130
C=253; O=3; E=0.24; R=12.47; rawP=0.0018; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
2  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298
3  ENSG00000110047 NA EHD1 EH-domain containing 1 10938 ENSG00000110047


Database:Transcription Target       Name:hsa_V$STAT1_02       ID:DB_ID:2143
C=249; O=3; E=0.24; R=12.67; rawP=0.0017; adjP=0.0203
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000153914 NA SREK1 splicing regulatory glutamine/lysine-rich protein 1 140890 ENSG00000153914
2  ENSG00000074211 NA PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 5522 ENSG00000074211
3  ENSG00000113649 NA TCERG1 transcription elongation regulator 1 10915 ENSG00000113649


Database:Transcription Target       Name:hsa_V$MMEF2_Q6       ID:DB_ID:2073
C=268; O=3; E=0.25; R=11.77; rawP=0.0021; adjP=0.0210
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298
2  ENSG00000255423 NA EBLN2 endogenous Bornavirus-like nucleoprotein 2 55096 ENSG00000255423
3  ENSG00000110047 NA EHD1 EH-domain containing 1 10938 ENSG00000110047


Database:Transcription Target       Name:hsa_WTGAAAT_UNKNOWN       ID:DB_ID:2379
C=609; O=4; E=0.58; R=6.91; rawP=0.0026; adjP=0.0234
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000080298 NA RFX3 regulatory factor X, 3 (influences HLA class II expression) 5991 ENSG00000080298
2  ENSG00000188467 NA SLC24A5 solute carrier family 24, member 5 283652 ENSG00000188467
3  ENSG00000161958 NA FGF11 fibroblast growth factor 11 2256 ENSG00000161958
4  ENSG00000110047 NA EHD1 EH-domain containing 1 10938 ENSG00000110047




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).